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Publications and references

Proceedings from conferences

  • Forest Genetics for Productivity; Rotorua, New Zealand; 14-18 March 2016. IUFRO Units involved: 2.02.20, 2.02.05, 2.04.06. Book of Abstracts  
  • Tree Biotechnology 2015 Conference: Forest: the importance to the planet and society; Florence, Italy; 8-12 June 2015. Proceedings   
  • Tree Biotechnology 2011 - From genomes to integration and delivery; Arraial d’Ajuda, Porto Seguro, Bahia, Brazil; 26 June - 2 July 2011. Book of Abstracts   
  • Tree Biotechnology in the Next Millenium; Stevenson, Washington, USA; 22-27 July 2001. Proceedings   
  • Forest Biotechnology: Into the Next Millennium; Oxford, United Kingdom; 11-16 July 1999. Proceedings


  • Yeh C.S., Wang Z., Miao F., Ma H., Kao C.T., Hsu T.S., Yu J.H., Hung E.T., Lin C.C., Kuan C.Y., Tsai N.C., Zhou C., Qu G.Z., Jiang J., Liu G., Wang J.P., Li W., Chiang V.L., Chang T.H., Lin Y.C.J. (2019) A Novel Synthetic-Genetic-Array Based Yeast One-Hybrid System for High Discovery Rate and Short Processing Time. Genome Research29:1343–1351
  • Li S., Lin Y.C.J., Wang P., Zhang B., Li M., Chen S., Shi R., Tunlaya-Anukit S., Liu X., Wang Z., Dai X., Yu J., Zhou C., Liu B., Wang J.P., Chiang V.L., Li W. (2019) Histone Acetylation Cooperating with AREB1 Transcription Factor Regulates Drought Response and Tolerance in Populus trichocarpa. The Plant Cell31, 663-686 
  • Lin Y.C.J., Chen H., Li Q., Shi R., Tunlaya-Anukit S., Shuai P., Li W., Li H., Sun Y.H., Sederoff R.R., Chiang V.L. (2017). Reciprocal cross-regulation of VND and SND multi-gene TF families in wood formation in Populus trichocarpa. PNAS 114(45):E9722-E9729
  • Orr AJ, Padovan A, Kainer D, Külheim C, Bromham L, Bustos-Segura C, Foley WJ, Haff T, Hsieh J-F, Morales-Suarez A, Cartwright RA, Lanfear R (2019) A phylogenomic approach reveals a low somatic mutation rate in a long-lived plant. Proceeding of the Royal Society B
  • Kainer D, Padovan A, Degenhardt J, Krause S, Mondal P, Foley WJ, Külheim C(2019) High marker density GWAS provides novel insights into the genomic architecture of terpene oil yield in Eucalyptus. New Phytologist 223:1489-1504
  • Plomion, C., Aury, J., Amselem, J. et al. Oak genome reveals facets of long lifespan. Nature Plants 4, 440–452 (2018).
  • Antoine L. Harfouche, Daniel A. Jacobson, David Kainer, Jonathon C. Romero, Antoine H. Harfouche, Giuseppe Scarascia Mugnozza, Menachem Moshelion, Gerald A. Tuskan, Joost J.B. Keurentjes, Arie Altman (2019) Accelerating Climate Resilient Plant Breeding by Applying Next-Generation Artificial Intelligence. Trends in Biotechnology 37: 1217-1235
  • Meena, Kamlesh K., Ajay M. Sorty, Utkarsh M. Bitla, Khushboo Choudhary, Priyanka Gupta, Ashwani Pareek, Dhananjaya P. Singh, Ratna Prabha, Pramod K. Sahu, Vijai K. Gupta, Harikesh B. Singh, Kishor K. Krishanani, and Paramjit S. Minhas. (2017) Abiotic Stress Responses and Microbe-Mediated Mitigation in Plants: The Omics Strategies. Frontiers in Plant Science 8(February):1–25.
  • Chen H, Wang JP, Liu H, Li H, Lin YJ, Shi R, Yang C, Gao J, Zhou C, Li Q, Sederoff RR, Li W, Chiang VL (2019) Hierarchical transcription factor and chromatin binding network for wood formation in Populus trichocarpa. Plant Cell 31 (3):602-626.
  • Wang JP, Matthews ML, Williams CM, Shi R, Yang C, Tunlaya-Anukit S, Chen HC, Li Q, Liu J, Lin CY, Naik P, Sun YH, Loziuk PL, Yeh TF, Kim H, Gjersing E, Shollenberger T, Shuford CM, Song J, Miller Z, Huang YY, Edmunds CW, Liu B, Sun Y, Lin YJ, Li W, Chen H, Peszlen I, Ducoste JJ, Ralph J, Chang HM, Muddiman DC, Davis MF, Smith C, Isik F, Sederoff R, Chiang VL (2018) Improving wood properties for wood utilization through multi-omics integration in lignin biosynthesis. Nature Communications 9 (1):1579.
  • Gui J, Lam PY, Tobimatsu Y, Sun J, Huang C, Cao S, Zhong Y, Umezawa T, Li L (2020) Fiber-specific regulation of lignin biosynthesis improves biomass quality in Populus. New Phytologist
  • Tsai, C.-J., Xu, P., Xue, L.-J., Hu, H., Nyamdari, B., Naran, R., Zhou, X., Goeminne, G., Gao, R., Gjersing, E., et al. (2020) Compensatory guaiacyl lignin biosynthesis at the expense of syringyl lignin in 4CL1-knockout poplar. Plant Physiology, pp.01550.02019;
  • Ribeiro CL, Conde D, Balmant KM, Dervinis C, Johnson MG, McGrath AP, Szewczyk P, Unda F, Finegan CA, Schmidt HW, Miles B, Drost DR, Novaes E, Gonzalez-Benecke CA, Peter GF, Burleigh JG, Martin TA, Mansfield SD, Chang G, Wickett NJ, Kirst M (2020) The uncharacterized gene EVE contributes to vessel element dimensions in Populus. PNAS 117: 5059-5066
  • Duran, R; Isik, F; Zapata J; Balocchi, C and S Valenzuela (2017) Genomic predictions of breeding values in a cloned Eucalyptus globulus population in Chile. Tree Genetics & Genomes 13(4).
  • Aguayo, P; Lagos, C; Conejera, D; Medina,D; Fernández, M and S Valenzuela (2019). Transcriptome‑wide identification of WRKY family genes and their expression under cold acclimation in Eucalyptus globulus. Trees